3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01468

Details:

PFam ID : PF01468

PFam Domain Description : GA module

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 351

Average sequence length: 58.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01468	D1WBE7_9LACO_1277_1334	36.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01468	F1T6F6_9ACTN_1032_1093	96.8

Sequence based PCA Plot of the family - PF01468 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay