3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01467

Details:

PFam ID : PF01467

PFam Domain Description : Cytidylyltransferase

Number of Sequence in 50% Dataset : 493

Number of Sequence in Full Dataset : 4461

Average sequence length: 142.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01467	C2KVZ0_9FIRM_6_82	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01467	F2QG10_STROR_7_61	99.4

Sequence based PCA Plot of the family - PF01467 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=131 Length=8
Motif3 Start=24 Length=11
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay