3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01465

Details:

PFam ID : PF01465

PFam Domain Description : GRIP domain

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 185

Average sequence length: 44.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01465	A2DEX4_TRIVA_206_248	25.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01465	Q235E3_TETTH_2032_2080	100

Sequence based PCA Plot of the family - PF01465 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay