3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01464

Details:

PFam ID : PF01464

PFam Domain Description : Transglycosylase SLT domain

Number of Sequence in 50% Dataset : 372

Number of Sequence in Full Dataset : 4253

Average sequence length: 114.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01464	Q01WD5_SOLUE_80_225	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01464	C0WJC4_9CORY_26_78	99.9

Sequence based PCA Plot of the family - PF01464 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=140 Length=8
Motif3 Start=167 Length=8
Motif4 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay