3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01463

Details:

PFam ID : PF01463

PFam Domain Description : Leucine rich repeat C-terminal domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 113

Average sequence length: 25.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01463	E9GML1_DAPPU_231_256	25.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01463	E7EZ01_DANRE_456_481	95.5

Sequence based PCA Plot of the family - PF01463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay