3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01459

Details:

PFam ID : PF01459

PFam Domain Description : Eukaryotic porin

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 476

Average sequence length: 251.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01459	Q9VF44_DROME_33_306	83.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01459	E5SZE7_TRISP_2_284	99.3

Sequence based PCA Plot of the family - PF01459 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay