3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01458

Details:

PFam ID : PF01458

PFam Domain Description : Uncharacterized protein family (UPF0051)

Number of Sequence in 50% Dataset : 179

Number of Sequence in Full Dataset : 1488

Average sequence length: 227.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01458	C2KWP4_9FIRM_1_38	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01458	D0DUV1_LACFE_126_283	100

Sequence based PCA Plot of the family - PF01458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay