3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01456

Details:

PFam ID : PF01456

PFam Domain Description : Mucin-like glycoprotein

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 748

Average sequence length: 172.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01456	Q4D3N2_TRYCR_1_32	53.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01456	Q4DWG0_TRYCR_1_156	98.5

Sequence based PCA Plot of the family - PF01456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay