3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01454

Details:

PFam ID : PF01454

PFam Domain Description : MAGE family

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 297

Average sequence length: 170.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01454	D4DDD0_TRIVH_123_221	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01454	F0ZNH1_DICPU_96_292	100

Sequence based PCA Plot of the family - PF01454 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=132 Length=8
Motif2 Start=14 Length=8
Motif3 Start=1 Length=8
Motif4 Start=184 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay