3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01453

Details:

PFam ID : PF01453

PFam Domain Description : D-mannose binding lectin

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 1358

Average sequence length: 101.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01453	Q6AT74_ORYSJ_351_437	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01453	D3B0V3_POLPA_235_336	99.8

Sequence based PCA Plot of the family - PF01453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=10 Length=8
Motif3 Start=39 Length=8
Motif4 Start=67 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay