3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01451

Details:

PFam ID : PF01451

PFam Domain Description : Low molecular weight phosphotyrosine protein phosphatase

Number of Sequence in 50% Dataset : 290

Number of Sequence in Full Dataset : 2644

Average sequence length: 133.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01451	D7UQD8_9PSED_13_80	82.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01451	A8DR45_9BACT_197_257	99.9

Sequence based PCA Plot of the family - PF01451 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=1 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay