3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01450

Details:

PFam ID : PF01450

PFam Domain Description : Acetohydroxy acid isomeroreductase, catalytic domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 869

Average sequence length: 141.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01450	D2A153_TRICA_96_145	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01450	E5KV47_AERHY_109_205	99.8

Sequence based PCA Plot of the family - PF01450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=38 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay