3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01448

Details:

PFam ID : PF01448

PFam Domain Description : ELM2 domain

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 210

Average sequence length: 55.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01448	D2A153_TRICA_96_145	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01448	B3RZ36_TRIAD_778_834	100

Sequence based PCA Plot of the family - PF01448 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=18
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay