3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01447

Details:

PFam ID : PF01447

PFam Domain Description : Thermolysin metallopeptidase, catalytic domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 448

Average sequence length: 139.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01447	D0XIB9_VIBHA_9_75	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01447	F2JZX0_9GAMM_283_451	100

Sequence based PCA Plot of the family - PF01447 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=55 Length=8
Motif3 Start=46 Length=8
Motif4 Start=66 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay