3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01443

Details:

PFam ID : PF01443

PFam Domain Description : Viral (Superfamily 1) RNA helicase

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 686

Average sequence length: 217.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01443	R1AB_WBV24_5645_5924	90.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01443	Q8SQK2_ENCCU_641_916	100

Sequence based PCA Plot of the family - PF01443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=2 Length=20
Motif3 Start=104 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay