3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01440

Details:

PFam ID : PF01440

PFam Domain Description : Geminivirus AL2 protein

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 343

Average sequence length: 130.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01440	C2_TPCTV_28_159	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01440	D8WZ47_9GEMI_1_131	99.7

Sequence based PCA Plot of the family - PF01440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=11
Motif2 Start=13 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay