3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01439

Details:

PFam ID : PF01439

PFam Domain Description : Metallothionein

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 197

Average sequence length: 72.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01439	E2GLM0_IPOAQ_1_64	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01439	Q8L6G9_POSOC_1_45	93.8

Sequence based PCA Plot of the family - PF01439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=30 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay