3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01436

Details:

PFam ID : PF01436

PFam Domain Description : NHL repeat

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 2592

Average sequence length: 27.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01436	B4JN24_DROGR_1046_1076	48

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01436	D5SY22_PLAL2_423_449	86

Sequence based PCA Plot of the family - PF01436 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay