3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01430

Details:

PFam ID : PF01430

PFam Domain Description : Hsp33 protein

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 789

Average sequence length: 274.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01430	Q550Q8_DICDI_245_370	92.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01430	Q9PCR5_XYLFA_1_103	100

Sequence based PCA Plot of the family - PF01430 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=117 Length=8
Motif3 Start=156 Length=8
Motif4 Start=259 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay