3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01429

Details:

PFam ID : PF01429

PFam Domain Description : Methyl-CpG binding domain

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 336

Average sequence length: 77.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01429	A7SNU1_NEMVE_3_125	85.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01429	A3C088_ORYSJ_5_99	99.7

Sequence based PCA Plot of the family - PF01429 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay