3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01428

Details:

PFam ID : PF01428

PFam Domain Description : AN1-like Zinc finger

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 663

Average sequence length: 42.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01428	A8NGP4_COPC7_65_118	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01428	C5KNQ8_9ALVE_18_61	99.8

Sequence based PCA Plot of the family - PF01428 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=14
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay