3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01427

Details:

PFam ID : PF01427

PFam Domain Description : D-ala-D-ala dipeptidase

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 425

Average sequence length: 170.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01427	D7CAQ9_STRBB_6_51	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01427	E8TE22_MESCW_87_296	100

Sequence based PCA Plot of the family - PF01427 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=21
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay