3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01426

Details:

PFam ID : PF01426

PFam Domain Description : BAH domain

Number of Sequence in 50% Dataset : 191

Number of Sequence in Full Dataset : 728

Average sequence length: 127.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01426	E2M1N3_MONPE_82_150	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01426	C6H902_AJECH_284_504	99.7

Sequence based PCA Plot of the family - PF01426 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=8
Motif2 Start=59 Length=8
Motif3 Start=160 Length=8
Motif4 Start=100 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay