3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01425

Details:

PFam ID : PF01425

PFam Domain Description : Amidase

Number of Sequence in 50% Dataset : 1112

Number of Sequence in Full Dataset : 4868

Average sequence length: 387.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01425	E6ZJK5_9BASI_84_623	58.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01425	E5XP95_9ACTO_1_82	100

Sequence based PCA Plot of the family - PF01425 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=117 Length=8
Motif2 Start=130 Length=11
Motif3 Start=149 Length=29
Motif4 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay