3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01423

Details:

PFam ID : PF01423

PFam Domain Description : LSM domain

Number of Sequence in 50% Dataset : 202

Number of Sequence in Full Dataset : 2131

Average sequence length: 68.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01423	Q7RIW4_PLAYO_8_129	57.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01423	Q7SG45_NEUCR_19_150	94.8

Sequence based PCA Plot of the family - PF01423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=27
Motif2 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay