3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01422

Details:

PFam ID : PF01422

PFam Domain Description : NF-X1 type zinc finger

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 115

Average sequence length: 20.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01422	B7P5D4_IXOSC_73_305	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01422	Q7Q8A1_ANOGA_468_486	98.2

Sequence based PCA Plot of the family - PF01422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay