3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01420

Details:

PFam ID : PF01420

PFam Domain Description : Type I restriction modification DNA specificity domain

Number of Sequence in 50% Dataset : 2056

Number of Sequence in Full Dataset : 4865

Average sequence length: 165.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01420	B6G8U0_9ACTN_1_69	57.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01420	Q11PS5_CYTH3_209_303	99.4

Sequence based PCA Plot of the family - PF01420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay