3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01418

Details:

PFam ID : PF01418

PFam Domain Description : Helix-turn-helix domain, rpiR family

Number of Sequence in 50% Dataset : 324

Number of Sequence in Full Dataset : 2011

Average sequence length: 74.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01418	Q4A0X1_STAS1_1_49	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01418	F2I4W4_9LACT_1_81	100

Sequence based PCA Plot of the family - PF01418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay