3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01417

Details:

PFam ID : PF01417

PFam Domain Description : ENTH domain

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 296

Average sequence length: 120.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01417	A5DTR1_LODEL_50_95	40.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01417	D7FQ31_ECTSI_233_342	100

Sequence based PCA Plot of the family - PF01417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=40 Length=8
Motif3 Start=106 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay