3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01416

Details:

PFam ID : PF01416

PFam Domain Description : tRNA pseudouridine synthase

Number of Sequence in 50% Dataset : 348

Number of Sequence in Full Dataset : 3615

Average sequence length: 106.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01416	Q4P5K5_USTMA_343_543	68.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01416	Q1NYH6_9FLAO_1_66	50

Sequence based PCA Plot of the family - PF01416 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=106 Length=11
Motif3 Start=55 Length=8
Motif4 Start=147 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay