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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01413
Details:

PFam ID : PF01413

PFam Domain Description : C-terminal tandem repeated domain in type 4 procollagen

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 186

Average sequence length: 103.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01413C4QFX3_SCHMA_1255_137184.6
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01413C4QFX3_SCHMA_1255_1371100
Sequence based PCA Plot of the family - PF01413 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=13 Length=17
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay