3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01413 Details: PFam ID : PF01413 PFam Domain Description : C-terminal tandem repeated domain in type 4 procollagen Number of Sequence in 50% Dataset : 27 Number of Sequence in Full Dataset : 186 Average sequence length: 103.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01413C4QFX3_SCHMA_1255_137184.6 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01413C4QFX3_SCHMA_1255_1371100 Sequence based PCA Plot of the family - PF01413 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 1 motifsMotif1 Start=13 Length=17 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01413
PFam Domain Description : C-terminal tandem repeated domain in type 4 procollagen
Number of Sequence in 50% Dataset : 27
Number of Sequence in Full Dataset : 186
Average sequence length: 103.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER