3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01411

Details:

PFam ID : PF01411

PFam Domain Description : tRNA synthetases class II (A)

Number of Sequence in 50% Dataset : 187

Number of Sequence in Full Dataset : 2120

Average sequence length: 387.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01411	A0CKM4_PARTE_6_151	80.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01411	F0ZIJ7_DICPU_121_176	100

Sequence based PCA Plot of the family - PF01411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8
Motif4 Start=55 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay