3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01409

Details:

PFam ID : PF01409

PFam Domain Description : tRNA synthetases class II core domain (F)

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 1456

Average sequence length: 221.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01409	C0ERW2_9FIRM_490_728	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01409	E1N890_9BIFI_99_255	99.9

Sequence based PCA Plot of the family - PF01409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=204 Length=8
Motif2 Start=49 Length=14
Motif3 Start=164 Length=8
Motif4 Start=186 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay