3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01408

Details:

PFam ID : PF01408

PFam Domain Description : Oxidoreductase family, NAD-binding Rossmann fold

Number of Sequence in 50% Dataset : 1267

Number of Sequence in Full Dataset : 7307

Average sequence length: 120.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01408	Q091V2_STIAD_25_119	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01408	A8TSC5_9PROT_4_63	100

Sequence based PCA Plot of the family - PF01408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=146 Length=8
Motif2 Start=106 Length=8
Motif3 Start=48 Length=8
Motif4 Start=132 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay