3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01407

Details:

PFam ID : PF01407

PFam Domain Description : Geminivirus AL3 protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 329

Average sequence length: 118.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01407	B3RKT4_TRIAD_19_436	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01407	D4HSB5_9GEMI_2_126	100

Sequence based PCA Plot of the family - PF01407 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=17
Motif2 Start=41 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay