3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01406

Details:

PFam ID : PF01406

PFam Domain Description : tRNA synthetases class I (C) catalytic domain

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 1523

Average sequence length: 304.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01406	B3RKT4_TRIAD_19_436	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01406	A5DSF6_LODEL_1_104	100

Sequence based PCA Plot of the family - PF01406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=44 Length=8
Motif2 Start=86 Length=44

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay