3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01404

Details:

PFam ID : PF01404

PFam Domain Description : Ephrin receptor ligand binding domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 98

Average sequence length: 154.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01404	B3RNU8_TRIAD_22_212	23.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01404	A7SAX6_NEMVE_21_189	100

Sequence based PCA Plot of the family - PF01404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=70 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay