3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01400

Details:

PFam ID : PF01400

PFam Domain Description : Astacin (Peptidase family M12A)

Number of Sequence in 50% Dataset : 253

Number of Sequence in Full Dataset : 872

Average sequence length: 167.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01400	D0NEQ5_PHYIT_124_359	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01400	Q0UTK3_PHANO_166_239	100

Sequence based PCA Plot of the family - PF01400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=47 Length=8
Motif3 Start=2 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay