3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01398

Details:

PFam ID : PF01398

PFam Domain Description : JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 888

Average sequence length: 109.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01398	Q2QM05_ORYSJ_1_78	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01398	E7LJK6_TRYCR_3_93	97.1

Sequence based PCA Plot of the family - PF01398 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=93 Length=8
Motif3 Start=77 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay