3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01397

Details:

PFam ID : PF01397

PFam Domain Description : Terpene synthase, N-terminal domain

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 614

Average sequence length: 162.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01397	A9RBJ4_PHYPA_1_62	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01397	D7LQU9_ARALL_10_95	99.8

Sequence based PCA Plot of the family - PF01397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay