3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01396

Details:

PFam ID : PF01396

PFam Domain Description : Topoisomerase DNA binding C4 zinc finger

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 2121

Average sequence length: 39.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01396	B0QV53_HAEPR_1_20	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01396	F2NW24_9SPIO_1_30	100

Sequence based PCA Plot of the family - PF01396 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay