3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01394

Details:

PFam ID : PF01394

PFam Domain Description : Clathrin propeller repeat

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 95

Average sequence length: 37.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01394	Q5C0K5_SCHJA_165_202	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01394	Q5C0K5_SCHJA_165_202	55

Sequence based PCA Plot of the family - PF01394 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay