3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01393

Details:

PFam ID : PF01393

PFam Domain Description : Chromo shadow domain

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 150

Average sequence length: 56.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01393	Q55P63_CRYNE_170_231	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01393	Q54RQ4_DICDI_180_238	100

Sequence based PCA Plot of the family - PF01393 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay