3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01392

Details:

PFam ID : PF01392

PFam Domain Description : Fz domain

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 484

Average sequence length: 111.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01392	B3S1W7_TRIAD_9_127	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01392	C3Z0N2_BRAFL_924_1079	100

Sequence based PCA Plot of the family - PF01392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=14
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay