3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01391

Details:

PFam ID : PF01391

PFam Domain Description : Collagen triple helix repeat (20 copies)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 11907

Average sequence length: 63.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01391	C8TDT9_EIMTE_150_333	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01391	B0FIT1_BPE32_61_159	98.5

Sequence based PCA Plot of the family - PF01391 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=71

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay