3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01388

Details:

PFam ID : PF01388

PFam Domain Description : ARID/BRIGHT DNA binding domain

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 430

Average sequence length: 89.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01388	E4YAL7_OIKDI_8_55	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01388	E6ZSX3_9BASI_231_349	100

Sequence based PCA Plot of the family - PF01388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=48 Length=8
Motif3 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay