3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01383

Details:

PFam ID : PF01383

PFam Domain Description : CpcD/allophycocyanin linker domain

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 181

Average sequence length: 54.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01383	Q05ZA1_9SYNE_6_53	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01383	Q117F9_TRIEI_212_263	100

Sequence based PCA Plot of the family - PF01383 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay