3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01382

Details:

PFam ID : PF01382

PFam Domain Description : Avidin family

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 50

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01382	B3RVB4_TRIAD_76_196	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01382	B3RVB4_TRIAD_76_196	100

Sequence based PCA Plot of the family - PF01382 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=4 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay