3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01381

Details:

PFam ID : PF01381

PFam Domain Description : Helix-turn-helix

Number of Sequence in 50% Dataset : 1495

Number of Sequence in Full Dataset : 11662

Average sequence length: 52.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01381	A0YUU1_LYNSP_7_72	65.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01381	C6BW06_DESAD_100_152	99.9

Sequence based PCA Plot of the family - PF01381 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=45 Length=8
Motif3 Start=25 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay