3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01378

Details:

PFam ID : PF01378

PFam Domain Description : B domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 11

Average sequence length: 44.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01378	E7CGG5_BACTU_55_84	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01378	Q56192_STAXY_238_290	100

Sequence based PCA Plot of the family - PF01378 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay